feat: add project skeleton

.gitignore

@@ -1,3 +1,19 @@
+# Backend config file
+/config.py
+
+# Local environments
+/.venv/
+/node_modules/
+
+# Cache files and directories
+*.pyc
+__pycache__/
+/.parcel-cache/
+
+# Bundled files
+/dist/
+
+# Latex compiled files
 **/*.aux
 **/*.bbl
 **/*.bcf
@@ -6,4 +22,4 @@
 **/*.log
 **/*.out
 **/*.run.xml
-proposal/*.pdf
+docs/proposal/*.pdf

.postcssrc

@@ -0,0 +1,7 @@
+{
+  "plugins": {
+    "postcss-import": {},
+    "tailwindcss/nesting": {},
+    "tailwindcss": {},
+  }
+}

README.md

@@ -1,3 +1,7 @@
+# MEDWings
+
+Mobile Early Deterioration Warning System.
+
 # MEWS
 
 The following vital signs need to be recorded for a MEWS calculation:
@@ -32,7 +36,3 @@ Access to vitals data is available through the [Withings API](https://developer.
 
 A detailed [API integration guide](https://developer.withings.com/developer-guide/v3/integration-guide/public-health-data-api/public-health-data-api-overview/),
 as well as an [API reference guide](https://developer.withings.com/api-reference) are available online.
-
-# Smart Home Lab
-
-???

backend/main.py

@@ -0,0 +1,8 @@
+from fastapi import FastAPI, HTTPException
+
+
+app = FastAPI()
+
+@app.get("/hello/")
+async def hello() -> str:
+    return "Hello World!"

development.Caddyfile

@@ -0,0 +1,38 @@
+:3000 {
+
+    encode zstd gzip
+
+    @staticfiles {
+        method GET
+        path /static/*
+    }
+    handle @staticfiles {
+        file_server {
+            root /app/public/
+        }
+    }
+
+    handle_path /api/* {
+        reverse_proxy * backend:3001
+    }
+
+    @robots {
+        method GET
+        path /robots.txt
+        path /sitemap.xml
+    }
+    handle @robots {
+        file_server {
+            root /app/robots/
+        }
+    }
+
+    handle * {
+        reverse_proxy * parcel:1234
+    }
+
+    log {
+        output stderr
+        format console
+    }
+}

development.backend.Dockerfile

@@ -0,0 +1,25 @@
+# syntax=docker/dockerfile:1
+
+FROM python:3
+
+# Create non-root user
+ARG CUSTOM_UID
+ARG CUSTOM_GID
+ENV CUSTOM_USERNAME=backend
+ENV CUSTOM_GROUPNAME=backend
+RUN groupadd --gid ${CUSTOM_GID:-1000} ${CUSTOM_GROUPNAME} && \
+    useradd --uid ${CUSTOM_UID:-1000} --gid ${CUSTOM_GID:-1000} --create-home --shell /bin/bash ${CUSTOM_USERNAME} && \
+    mkdir /app && chown ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} /app
+
+# Copy source files
+WORKDIR /app
+COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} requirements.txt /app/
+COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} backend /app/backend/
+
+# Install dependencies
+RUN pip install -r requirements.txt
+
+# Run ASGI server
+EXPOSE 3001/tcp
+USER ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000}
+ENTRYPOINT ["uvicorn", "backend.main:app", "--root-path", "/api", "--host", "0.0.0.0", "--port", "3001", "--access-log", "--use-colors", "--log-level", "debug", "--reload"]

development.docker-compose.yml

@@ -0,0 +1,54 @@
+---
+
+version: "3"
+
+services:
+  frontend:
+    container_name: frontend
+    restart: unless-stopped
+    build:
+      context: .
+      dockerfile: ./development.frontend.Dockerfile
+      args:
+        CUSTOM_UID: 1000
+        CUSTOM_GID: 1000
+    environment:
+      TZ: Europe/Berlin
+    ports:
+      - "8000:3000"
+    volumes:
+      - ./public/:/app/public/:ro
+      - ./robots/:/app/robots/:ro
+      - ./Caddyfile:/app/Caddyfile:ro
+  parcel:
+    container_name: parcel
+    restart: unless-stopped
+    build:
+      context: .
+      dockerfile: ./development.parcel.Dockerfile
+      args:
+        CUSTOM_UID: 1000
+        CUSTOM_GID: 1000
+    volumes:
+      - ./frontend/:/app/frontend/:ro
+      - ./postcss.config.js:/app/postcss.config.js:ro
+      - ./.postcssrc:/app/.postcssrc:ro
+      - ./tailwind.config.js:/app/tailwind.config.js:ro
+    expose:
+      - "1234"
+  backend:
+    container_name: backend
+    restart: unless-stopped
+    build:
+      context: .
+      dockerfile: ./development.backend.Dockerfile
+      args:
+        CUSTOM_UID: 1000
+        CUSTOM_GID: 1000
+    expose:
+      - "3001"
+    volumes:
+      - ./backend/:/app/backend/:ro
+      - ./requirements.txt:/app/requirements.txt:ro
+
+...

development.frontend.Dockerfile

@@ -0,0 +1,33 @@
+# syntax=docker/dockerfile:1
+
+FROM debian:latest
+
+# Install Caddy
+ENV DEBIAN_FRONTEND=noninteractive
+RUN apt update && apt install -y curl && \
+    apt install -y debian-keyring debian-archive-keyring apt-transport-https && \
+    curl -1sLf 'https://dl.cloudsmith.io/public/caddy/stable/gpg.key' | gpg --dearmor -o /usr/share/keyrings/caddy-stable-archive-keyring.gpg && \
+    curl -1sLf 'https://dl.cloudsmith.io/public/caddy/stable/debian.deb.txt' > /etc/apt/sources.list.d/caddy-stable.list && \
+    apt update && apt install -y caddy && \
+    rm -rf /var/lib/apt/lists/*
+
+# Create non-root user
+ARG CUSTOM_UID
+ARG CUSTOM_GID
+ENV CUSTOM_USERNAME=webserver
+ENV CUSTOM_GROUPNAME=webserver
+RUN groupadd --gid ${CUSTOM_GID:-1000} ${CUSTOM_GROUPNAME} && \
+    useradd --uid ${CUSTOM_UID:-1000} --gid ${CUSTOM_GID:-1000} --create-home --shell /bin/bash ${CUSTOM_USERNAME} && \
+    mkdir /app && chown ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} /app
+
+# Copy source files
+WORKDIR /app
+COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} development.Caddyfile /app/
+COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} public /app/public/
+COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} robots /app/robots/
+
+# Install dependencies
+USER ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000}
+
+# Run Caddy in development mode
+ENTRYPOINT ["caddy", "run", "--config", "/app/development.Caddyfile", "--adapter", "caddyfile", "--watch"]

development.parcel.Dockerfile

@@ -0,0 +1,34 @@
+# syntax=docker/dockerfile:1
+
+FROM debian:latest
+
+# Install packages
+ENV DEBIAN_FRONTEND=noninteractive
+RUN apt update && apt install -y curl && \
+    curl -fsSL https://deb.nodesource.com/setup_19.x | bash - && apt-get install -y nodejs && \
+    apt install -y debian-keyring debian-archive-keyring apt-transport-https && \
+    curl -1sLf 'https://dl.cloudsmith.io/public/caddy/stable/gpg.key' | gpg --dearmor -o /usr/share/keyrings/caddy-stable-archive-keyring.gpg && \
+    curl -1sLf 'https://dl.cloudsmith.io/public/caddy/stable/debian.deb.txt' > /etc/apt/sources.list.d/caddy-stable.list && \
+    apt update && apt install -y caddy && \
+    rm -rf /var/lib/apt/lists/*
+
+# Create non-root user
+ARG CUSTOM_UID
+ARG CUSTOM_GID
+ENV CUSTOM_USERNAME=webserver
+ENV CUSTOM_GROUPNAME=webserver
+RUN groupadd --gid ${CUSTOM_GID:-1000} ${CUSTOM_GROUPNAME} && \
+    useradd --uid ${CUSTOM_UID:-1000} --gid ${CUSTOM_GID:-1000} --create-home --shell /bin/bash ${CUSTOM_USERNAME} && \
+    mkdir /app && chown ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} /app
+
+# Copy source files
+WORKDIR /app
+COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} package.json package-lock.json .postcssrc postcss.config.js tailwind.config.js /app/
+COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} frontend /app/frontend/
+
+# Install dependencies
+USER ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000}
+RUN npm install
+
+# Run the parcel file watcher
+ENTRYPOINT ["npx", "parcel", "frontend/src/html/index.html"]

docs/figures/.$gantt.drawio.bkp

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docs/figures/.$gantt.drawio.dtmp

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docs/figures/gantt.drawio

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docs/proposal/proposal.tex

@@ -74,7 +74,8 @@ The individual scores are then added together to produce the final MEWS.
 \end{table}
 
 Traditionally, doctors and nursing staff perform collection and evaluation of the data manually, often inputting data into an EWS-calculator by hand.
-Low frequency of scoring, miscalculations and practical integration are known setbacks of NEWS2 and other scores\cite{eisenkraft_developing_2023}.
+However, as Eisenkraft et al. mentioned in 2023, ``some known setbacks of the NEWS and other scales are the frequency of scoring and
+response, integration into practice, a miscalculation by healthcare providers [...]''\cite{eisenkraft_developing_2023}{(p.2)}.
 
 Remote patient monitoring (RPM) can improve deterioration detection\cite{shaik_remote_2023} by greatly reducing the
 amount of human interaction required to take measurements and perform EWS calculations.
@@ -95,8 +96,9 @@ specialized equipment and technical expertise.
 Furthermore, these systems are cumbersome for patients, as they involve connecting patient and sensor device with numerous electrodes
 and cables, restricting patient mobility to the bed area, and physically tying the monitoring equipment
 to a single location.
-In contrast, battery-powered, wireless vitals monitoring devices, such as wearable arm- or wristbands, can incorporate multiple biosensors in a single device in a
-smaller form-factor, and allow for a much higher degree of patient mobility, rapid deployment and scalability\cite{un_observational_2021}.
+Conversely, battery-powered, wireless vitals monitoring devices, such as wearable armbands or smartwatches, can combine several
+biometric sensors into one device, allowing for a much higher degree of patient mobility, faster deployment and better
+scalability\cite{un_observational_2021}.
 Therefore, utilizing such devices for RPM is a suitable approach.
 
 While the application of EWS in ambulant care facilities and hospitals has been thoroughly investigated, very little research has been done to
@@ -183,7 +185,7 @@ the web application and its alert system prompts the patient periodically to tak
 
 Following the technical implementation of the described system, its day-to-day usability and effectiveness will be evaluated in
 a case study.
-Over the course of two weeks, a test subject, representing a patient recently dismissed from an accident and emergency hospital department
+Over the course of a week, a test subject, representing a patient recently dismissed from an accident and emergency hospital department
 (A\&E) will be using the system both at home and while out and about.
 While awake, the patient will be prompted by the system via smartphone notifications to take new measurements every two hours. 
 The captured data and resulting MEWS records will be periodically reviewed by another person representing medical staff during

figures/gantt.drawio

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